Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
ESCA rs6973849 chr7:5109962 C/G 8.51E-5 178 13.1 14.13 4.55 KM Plot
ESCA rs6982092 chr8:120874360 A/G 3.68E-7 183 12.97 18.58 3.73 KM Plot
ESCA rs6982342 chr8:120881817 A/G 2.37E-7 179 3.47 18.58 12.97 KM Plot
ESCA rs6986660 chr8:41353521 T/G 1.9E-7 183 13.02 17.27 2.7 KM Plot
ESCA rs6987018 chr8:120874909 G/A 3.66E-7 183 13.02 18.58 3.73 KM Plot
ESCA rs6987100 chr8:120875221 A/G 3.68E-7 183 12.97 18.58 3.73 KM Plot
ESCA rs6987160 chr8:120874963 G/A 3.68E-7 183 12.97 18.58 3.73 KM Plot
ESCA rs6987389 chr8:120875326 A/G 2.97E-7 184 12.97 18.57 3.73 KM Plot
ESCA rs6990227 chr8:2470160 T/G 1.84E-9 179 13.1 15.57 2.93 KM Plot
ESCA rs7001930 chr8:120888080 A/T 2.25E-7 180 3.47 18.57 12.97 KM Plot
ESCA rs7002440 chr8:120874421 T/G 3.68E-7 183 12.97 18.58 3.73 KM Plot
ESCA rs7007123 chr8:120875017 T/C 3.68E-7 183 12.97 18.58 3.73 KM Plot
ESCA rs7007265 chr8:120875087 T/C 3.68E-7 183 12.97 18.58 3.73 KM Plot
ESCA rs7007320 chr8:120888900 G/C 2.25E-7 180 3.47 18.57 12.97 KM Plot
ESCA rs702323 chr6:146008274 A/G 9.15E-5 184 10.1 13.12 13.57 KM Plot